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Malignant Hematopoiesis| Volume 42, ISSUE 11, P955-965.e5, November 2014

The ordered acquisition of Class II and Class I mutations directs formation of human t(8;21) acute myelogenous leukemia stem cell

  • Takahiro Shima
    Affiliations
    Department of Medicine and Biosystemic Science, Graduate School of Medical Sciences, Kyushu University Graduate School of Medicine, Fukuoka, Japan

    Center for Cellular and Molecular Medicine, Graduate School of Medical Sciences, Kyushu University Graduate School of Medicine, Fukuoka, Japan
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  • Toshihiro Miyamoto
    Affiliations
    Department of Medicine and Biosystemic Science, Graduate School of Medical Sciences, Kyushu University Graduate School of Medicine, Fukuoka, Japan
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  • Yoshikane Kikushige
    Affiliations
    Department of Medicine and Biosystemic Science, Graduate School of Medical Sciences, Kyushu University Graduate School of Medicine, Fukuoka, Japan
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  • Junichiro Yuda
    Affiliations
    Center for Cellular and Molecular Medicine, Graduate School of Medical Sciences, Kyushu University Graduate School of Medicine, Fukuoka, Japan
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  • Taro Tochigi
    Affiliations
    Center for Cellular and Molecular Medicine, Graduate School of Medical Sciences, Kyushu University Graduate School of Medicine, Fukuoka, Japan
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  • Goichi Yoshimoto
    Affiliations
    Department of Medicine and Biosystemic Science, Graduate School of Medical Sciences, Kyushu University Graduate School of Medicine, Fukuoka, Japan
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  • Koji Kato
    Affiliations
    Department of Medicine and Biosystemic Science, Graduate School of Medical Sciences, Kyushu University Graduate School of Medicine, Fukuoka, Japan
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  • Katsuto Takenaka
    Affiliations
    Department of Medicine and Biosystemic Science, Graduate School of Medical Sciences, Kyushu University Graduate School of Medicine, Fukuoka, Japan
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  • Hiromi Iwasaki
    Affiliations
    Center for Cellular and Molecular Medicine, Graduate School of Medical Sciences, Kyushu University Graduate School of Medicine, Fukuoka, Japan
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  • Shinichi Mizuno
    Affiliations
    Department of Medicine and Biosystemic Science, Graduate School of Medical Sciences, Kyushu University Graduate School of Medicine, Fukuoka, Japan
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  • Noriko Goto
    Affiliations
    Cancer Research Institute of Kanazawa University, Ishikawa, Japan
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  • Koichi Akashi
    Correspondence
    Offprint requests to: Prof. Koichi Akashi, Kyushu University Graduate School of Medicine, Department of Medicine and Biosystemic Sciences, 3-1-1 Maidashi, Higashi-Ku, Fukuoka City, Fukuoka 812-0054, Japan
    Affiliations
    Department of Medicine and Biosystemic Science, Graduate School of Medical Sciences, Kyushu University Graduate School of Medicine, Fukuoka, Japan

    Center for Cellular and Molecular Medicine, Graduate School of Medical Sciences, Kyushu University Graduate School of Medicine, Fukuoka, Japan
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Open AccessPublished:August 04, 2014DOI:https://doi.org/10.1016/j.exphem.2014.07.267
      The cellular properties of leukemia stem cells (LSCs) are achieved at least through Class I and Class II mutations that generate signals for enhanced proliferation and impaired differentiation, respectively. Here we show that in t(8;21) acute myelogenous leukemia (AML), hematopoietic stem cells (HSCs) transform into LSCs via definitively-ordered acquisition of Class II (AML1/ETO) and then Class I (c-KIT mutant) abnormalities. Six t(8;21) AML patients with c-KIT mutants maintaining > 3 years of complete remission were analyzed. At diagnosis, all single LSCs had both AML1/ETO and c-KIT mutations. However, in remission, 16 out of 1,728 CD34+CD38 HSCs and 89 out of 7,187 single HSC-derived myeloerythroid colonies from these patients had AML1/ETO, whose breakpoints were identical to those found in LSCs. These cells had wild-type c-KIT, which expressed AML1/ETO at a low level, and could differentiate into mature blood cells, suggesting that they may be the persistent preleukemic stem cells. Microarray analysis suggested that mutated c-KIT signaling provides LSCs with enhanced survival and proliferation. Thus, in t(8;21) AML, the acquisition of AML1/ETO is not sufficient, and the subsequent upregulation of AML1/ETO and the additional c-KIT mutant signaling are critical steps for transformation into LSCs.
      Acute myelogenous leukemia (AML) is characterized by deregulated proliferation and impaired differentiation of immature hematopoietic cells and originates from leukemia stem cells (LSCs). Leukemia stem cells have cellular properties, such as self-renewal activity, impairment of full maturation, and reinforced survival, which may cooperatively play a role in advantageous growth compared with normal hematopoietic stem cells (HSCs). Such cellular properties of LSCs result from multiple genetic abnormalities that are presumably accumulated within the long-surviving, self-renewing HSCs [
      • Passegue E.
      • Jamieson C.H.
      • Ailles L.E.
      • Weissman I.L.
      Normal and leukemic hematopoiesis: are leukemias a stem cell disorder or a reacquisition of stem cell characteristics?.
      ,
      • Huntly B.J.
      • Gilliland D.G.
      Leukaemia stem cells and the evolution of cancer-stem-cell research.
      ]. Recent mouse studies have suggested that these genetic abnormalities could be categorized into at least two classes. Class I mutations confer a proliferative and/or survival advantage against hematopoietic progenitors and are exemplified by constitutively activated tyrosine kinases such as BCR-ABL, FLT3 internal tandem duplication (FLT3-ITD), and mutated c-KIT. On the other hand, Class II mutations impair hematopoietic differentiation, which includes the core binding factor (CBF) mutations such as AML1/ETO [
      • Murati A.
      • Brecqueville M.
      • Devillier R.
      • Mozziconacci M.J.
      • Gelsi-Boyer V.
      • Birnbaum D.
      Myeloid malignancies: mutations, models and management.
      ,
      • Speck N.A.
      • Gilliland D.G.
      Core-binding factors in haematopoiesis and leukaemia.
      ]. Several mouse models have demonstrated that the combined effects of enhanced proliferation (by Class I abnormalities) and differentiation block (by Class II abnormalities) result in AML development [
      • Gilliland D.G.
      • Griffin J.D.
      The roles of FLT3 in hematopoiesis and leukemia.
      ,
      • Yuan Y.
      • Zhou L.
      • Miyamoto T.
      • et al.
      AML1-ETO expression is directly involved in the development of acute myeloid leukemia in the presence of additional mutations.
      ,
      • Schessl C.
      • Rawat V.P.
      • Cusan M.
      • et al.
      The AML1-ETO fusion gene and the FLT3 length mutation collaborate in inducing acute leukemia in mice.
      ,
      • Grisolano J.L.
      • O'Neal J.
      • Cain J.
      • Tomasson M.H.
      An activated receptor tyrosine kinase, TEL/PDGFbetaR, cooperates with AML1/ETO to induce acute myeloid leukemia in mice.
      ,
      • Wang Y.Y.
      • Zhao L.J.
      • Wu C.F.
      • et al.
      C-KIT mutation cooperates with full-length AML1-ETO to induce acute myeloid leukemia in mice.
      ], but these processes have, to our knowledge, never been documented in de novo human AML.
      In AML, AML1/ETO achieved by t(8;21) is one of the most common chromosomal abnormalities [
      • Rowley J.D.
      Molecular genetics in acute leukemia.
      ,
      • Peterson L.F.
      • Zhang D.E.
      The 8;21 translocation in leukemogenesis.
      ]. The enforced AML1/ETO expression in hematopoietic cells could block their differentiation [
      • Hart S.M.
      • Foroni L.
      Core binding factor genes and human leukemia.
      ,
      • Komine O.
      • Hayashi K.
      • Natsume W.
      • et al.
      The Runx1 transcription factor inhibits the differentiation of naive CD4+ T cells into the Th2 lineage by repressing GATA3 expression.
      ,
      • Yergeau D.A.
      • Hetherington C.J.
      • Wang Q.
      • et al.
      Embryonic lethality and impairment of haematopoiesis in mice heterozygous for an AML1-ETO fusion gene.
      ] because AML1/ETO inhibits CBF complexes that can transactivate multiple myeloid-related genes (e.g., CEBPA, MPO, and IL3), in a dominant negative fashion. Frequently, t(8;21) AML patients possess constitutively active Class I mutation of c-KIT and FLT3 [
      • Schessl C.
      • Rawat V.P.
      • Cusan M.
      • et al.
      The AML1-ETO fusion gene and the FLT3 length mutation collaborate in inducing acute leukemia in mice.
      ,
      • Nanri T.
      • Matsuno N.
      • Kawakita T.
      • et al.
      Mutations in the receptor tyrosine kinase pathway are associated with clinical outcome in patients with acute myeloblastic leukemia harboring t(8;21)(q22;q22).
      ,
      • Shen Y.
      • Zhu Y.M.
      • Fan X.
      • et al.
      Gene mutation patterns and their prognostic impact in a cohort of 1185 patients with acute myeloid leukemia.
      ]. In mouse studies, AML1/ETO knock-in or transgenic mice did not develop AML [
      • Wang Y.Y.
      • Zhao L.J.
      • Wu C.F.
      • et al.
      C-KIT mutation cooperates with full-length AML1-ETO to induce acute myeloid leukemia in mice.
      ,
      • Yergeau D.A.
      • Hetherington C.J.
      • Wang Q.
      • et al.
      Embryonic lethality and impairment of haematopoiesis in mice heterozygous for an AML1-ETO fusion gene.
      ,
      • Higuchi M.
      • O'Brien D.
      • Kumaravelu P.
      • Lenny N.
      • Yeoh E.J.
      • Downing J.R.
      Expression of a conditional AML1-ETO oncogene bypasses embryonic lethality and establishes a murine model of human t(8;21) acute myeloid leukemia.
      ], but these mice developed AML following introduction of Class I genetic abnormalities such as mutations of the c-KIT [
      • Wang Y.Y.
      • Zhao L.J.
      • Wu C.F.
      • et al.
      C-KIT mutation cooperates with full-length AML1-ETO to induce acute myeloid leukemia in mice.
      ,
      • Wang Y.Y.
      • Zhou G.B.
      • Yin T.
      • et al.
      AML1-ETO and C-KIT mutation/overexpression in t(8;21) leukemia: implication in stepwise leukemogenesis and response to Gleevec.
      ], FLT3 [
      • Schessl C.
      • Rawat V.P.
      • Cusan M.
      • et al.
      The AML1-ETO fusion gene and the FLT3 length mutation collaborate in inducing acute leukemia in mice.
      ], and TEL-PDGFRa genes [
      • Grisolano J.L.
      • O'Neal J.
      • Cain J.
      • Tomasson M.H.
      An activated receptor tyrosine kinase, TEL/PDGFbetaR, cooperates with AML1/ETO to induce acute myeloid leukemia in mice.
      ]. These data strongly suggest that the acquisition of AML1/ETO fusion alone is not sufficient, and some additional oncogenic events are needed for the development of t(8;21) AML. However, these studies were based on mouse models, where the expression of Class I and Class II genes was artificially enforced. The critical questions are whether these multistep oncogenic events involve human AML and, if so, whether they occur at random or in a definitive order.
      Our previous t(8;21) AML patient studies have proven that t(8;21) is acquired in long-term HSCs but it is not sufficient for AML development [
      • Miyamoto T.
      • Nagafuji K.
      • Akashi K.
      • et al.
      Persistence of multipotent progenitors expressing AML1/ETO transcripts in long-term remission patients with t(8;21) acute myelogenous leukemia.
      ,
      • Miyamoto T.
      • Weissman I.L.
      • Akashi K.
      AML1/ETO-expressing nonleukemic stem cells in acute myelogenous leukemia with 8;21 chromosomal translocation.
      ]. We found that t(8;21) AML patients maintaining remission long term (>10 years) always possessed a small amount of AML1/ETO mRNA in their blood and bone marrow cells. These AML1/ETO+ cells may be derived from HSCs having a low level of AML1/ETO mRNA, the frequency of which was estimated to be approximately 1% of HSCs [
      • Miyamoto T.
      • Weissman I.L.
      • Akashi K.
      AML1/ETO-expressing nonleukemic stem cells in acute myelogenous leukemia with 8;21 chromosomal translocation.
      ]. Thus, the acquisition of AML1/ETO is not sufficient for leukemic transformation in humans. Therefore, we proposed that such AML1/ETO+ HSCs are preleukemic clones that have achieved a precondition for leukemic transformation by additional oncogenic hits [
      • Miyamoto T.
      • Weissman I.L.
      • Akashi K.
      AML1/ETO-expressing nonleukemic stem cells in acute myelogenous leukemia with 8;21 chromosomal translocation.
      ]. Wiemels et al. have reported that a fraction of t(8;21) AML children had AML1/ETO+ clones in their blood samples from neonatal Guthrie blood spots [
      • Wiemels J.L.
      • Xiao Z.
      • Buffler P.A.
      • et al.
      In utero origin of t(8;21) AML1-ETO translocations in childhood acute myeloid leukemia.
      ], suggesting that t(8;21) translocation can be achieved in utero, and resultant AML1/ETO+ HSCs can form a reservoir for the preleukemic clone after birth [
      • Wiemels J.L.
      • Xiao Z.
      • Buffler P.A.
      • et al.
      In utero origin of t(8;21) AML1-ETO translocations in childhood acute myeloid leukemia.
      ].
      Based on these data, we sequentially tracked the involvement of Class I and Class II mutations during clinical courses of t(8;21) AML patients. Here we show that, by single HSC and LSC analyses of AML1/ETO in patients with mutated c-KIT, all single AML1/ETO+ LSCs at diagnosis had c-KIT mutations, whereas they were never found within AML1/ETO+ HSCs in remission. Our data clearly show that AML1/ETO+ HSCs should belong to the preleukemic clone and are transformed into LSCs by subsequent acquisition of c-KIT mutation. This is, to our knowledge, the first clear-cut evidence that normal HSCs transform into LSCs via definitively-ordered acquisition of Class II and then Class I mutations in de novo human AML.

      Methods

      Patients and samples

      Patients' characteristics are shown in Table 1. This study included bone marrow cells from 33 t(8;21) AML cases at diagnosis (Patients 1–33), 13 cases in remission (Patients 1, 3, 7–9, 11, 13, 21–23, 26–27, and 31), and 13 cases at relapse (Patients 2, 5–6, 10, 14, 16–17, 25, 28–30, and 32–33). Remission marrow samples were obtained at least 12 months from first remission, and all the patients remained in remission at the time of this report. Out of 33 cases, 20 obtained complete remission only by chemotherapies. Patients 2 and 10 further received allogeneic bone marrow transplantation, and Patient 5 further received cord blood transplantation. On AML cells, CD19 and CD56 are known as the prognostic markers associated with the possession of c-KIT mutation [
      • Nanri T.
      • Matsuno N.
      • Kawakita T.
      • et al.
      Mutations in the receptor tyrosine kinase pathway are associated with clinical outcome in patients with acute myeloblastic leukemia harboring t(8;21)(q22;q22).
      ,
      • Baer M.R.
      • Stewart C.C.
      • Lawrence D.
      • et al.
      Expression of the neural cell adhesion molecule CD56 is associated with short remission duration and survival in acute myeloid leukemia with t(8;21)(q22;q22).
      ]. The AML cells of all 13 cases with c-KIT mutation at diagnosis were CD19CD56+. Human marrow was purchased from AllCells (Emeryville, CA). Informed consent was obtained from all patients. The Institutional Review Board of Kyushu University Hospital (Fukuoka, Japan) approved all research.
      Table 1Patients' characteristics
      PatientAgeSexFABKaryotypeCD19CD56Treatmentc-KIT at diagnosisc-KIT at relapseMarrow sampling (month from 1st remission)Remission duration (month)NRAS mutationFLT3-ITD
      157MM245,X,-Y,t(8;21)(q22;q22)(−)(+)Ch-TxwtRemission14>29(−)(−)
      227FM245,X,-X,t(8;21)(q22;q22)(−)(+)Allo-BMTD816VD816V2(−)(−)
      333FM246,XX,t(8;21)(q22;q22)(−)(+)Ch-TxD816VRemission13>37(−)(−)
      440FM246,XX,t(8;21)(q22;q22)(−)(+)Ch-TxwtRemissionNA>41(−)(−)
      524FM246,XX,t(8;21)(q22:q22)(−)(+)CBTD816VD816V7(−)(−)
      665MM245,X,-Y(AML1/ETO+)(+)(+)Ch-Txwtwt24(−)(−)
      741MM246,XY,t(8;21)(q22;q22),+complex(−)(+)Ch-TxD816VRemission20>44(−)(−)
      830FM245,X,-X,t(8;21)(q22;q22)(−)(+)Ch-TxN822KRemission60>90(−)(−)
      984FM246,XX t(8;21)(q22;q22)(−)(−)Ch-TxwtRemission14>23(−)(−)
      1032MM245,X,-Y,t(8;21)(q22;q22)(−)(+)Allo-BMTwtwt7(−)(−)
      1165FM246,XX,t(8;21)(q22;q22)(−)(+)Ch-TxN822KRemission20>46(−)(−)
      1276FM246,XX,t(8;21) (q22;q22)(−)(−)Ch-TxwtRemissionNA>39(−)(−)
      1356MM246,XY,t(8;21)(q22;q22)(−)(−)Ch-TxwtRemission12>28(−)(+)
      1419MM246,XY t(8;21)(q22;q22)(−)(+)Ch-TxN822KD816Y10(−)(−)
      1562FM246,XX,t(8;21)(q22;q22)(−)(−)Ch-TxwtRemissionNA>19(−)(−)
      1614FM246,XX t(8;21)(q22;q22)(−)(+)Ch-TxN822KN822K8(−)(−)
      1757FM248,XX,+4,+6,t(8;21)(q22;q22)(−)(+)Ch-TxD816YD816Y10(−)(−)
      1856MM245,XY,t(8;21)(q22,q22),+complex(−)(−)Ch-TxwtRemissionNA>88(−)(−)
      1921MM245,X,-Y,t(8;21)(q22;q22)(−)(+)Ch-TxwtRemissionNA>31(−)(−)
      2025MM246,XY,t(8;21)(q22;q22)(−)(+)Ch-TxwtRemissionNA>65(−)(−)
      2134MM245,X,-Y,t(8;21)(q22,q22)(−)(+)Ch-TxD816YRemission22>49(−)(−)
      2257MM246,XY,t(8;21)(q22;q22)(−)(−)Ch-TxwtRemission18>32(−)(−)
      2339MM246,XY,t(8;21)(q22;q22)(−)(+)Ch-TxD816VRemission23>59(−)(−)
      2416MM246,X,Y,t(8;21)(q22;q22)(−)(+)Ch-TxwtRemissionNA>77(−)(−)
      2537MM245,X,-Y,t(8;21)(q22;q22)(−)(+)Ch-TxD816VD816V4(−)(−)
      2648MM246,XY,t(8;21)(q22:q22)(+)(−)Ch-TxwtRemission19>40(−)(−)
      2765MM246,XY,t(8;21)(q22:q22)(−)(+)Ch-TxwtRemission12>36(−)(−)
      2865MM245,X,-Y,t(8;21)(q22:q22)(−)(+)Ch-Txwtwt8(−)(−)
      2947MM246,XY,t(8;21)(q22:q22)(+)(−)Ch-Txwtwt10(−)(−)
      3065MM245,X,-Y,t(8;21)(q22:q22)(−)(+)Ch-Txwtwt11(−)(−)
      3139MM246,XY,t(8;21)(q22;q22)(−)(−)Ch-TxwtRemission29>69(−)(−)
      3239FM246,XX,t(8;21)(q22:q22)(−)(+)Ch-TxN822KN822K20(−)(−)
      3329MM245,X,-Y,t(8;21)(q22:q22)(+)(+)Ch-Txwtwt9(−)(+)
      Allo-BMT = allogeneic bone marrow transplantation; CBT = cord blood transplantation; Ch-Tx = chemotherapy; wt = wild type.

      Flow cytometry analysis and cell sorting

      For analysis of CD34+CD38 cells, bone marrow mononuclear cells were prepared as previously described [
      • Miyamoto T.
      • Nagafuji K.
      • Akashi K.
      • et al.
      Persistence of multipotent progenitors expressing AML1/ETO transcripts in long-term remission patients with t(8;21) acute myelogenous leukemia.
      ,
      • Shima T.
      • Miyamoto T.
      • Kikushige Y.
      • et al.
      Quantitation of hematogones at the time of engraftment is a useful prognostic indicator in allogeneic hematopoietic stem cell transplantation.
      ]. Cells were stained with APC-anti-CD34, FITC-anti-CD90, PE-anti-CD117 (c-KIT), Cy5-PE-lineage (Lin) mixture (anti-CD3, -CD4, -CD8, -CD10, -CD20, -CD256) (BD Pharmingen, San Jose, CA), and biotin-anti-CD38 (Caltag Laboratories, Buckingham, UK). Streptavidin-Cy7-allophycocyanin (BD Pharmingen) was also used.

      Quantitative real-time polymerase chain reaction

      We isolated RNA from 5,000 cells using Isogen reagent (Nippon gene). We reverse transcribed RNA to cDNA using TaKaRa RNA polymerase chain reaction (PCR) kit (Takara Shuzo, Shiga, Japan). The mRNA levels were quantified by real-time PCR (Applied Biosystems, Carlsbad, CA). β2-microglobulin (B2MG) was used for internal control. The primer and probes for B2MG, c-KIT, C-X-X chemokine receptor type 4 (CXCR4), B-cell lymphoma 2 (BCL2), myeloid cell leukemia 1 (MCL1) and nuclear factor kappa B1 (NFKB1) were purchased from Applied Biosystems.

      Reverse transcription polymerase chain reaction

      To examine the AML1/ETO and glyceraldehyde-3-phosphate dehydrogenase (GAPDH) mRNA expression, reverse transcription-PCR (RT-PCR) was performed as previously reported [
      • Miyamoto T.
      • Nagafuji K.
      • Akashi K.
      • et al.
      Persistence of multipotent progenitors expressing AML1/ETO transcripts in long-term remission patients with t(8;21) acute myelogenous leukemia.
      ,
      • Miyamoto T.
      • Weissman I.L.
      • Akashi K.
      AML1/ETO-expressing nonleukemic stem cells in acute myelogenous leukemia with 8;21 chromosomal translocation.
      ]. Kasumi-1, a t(8;21) AML cell line, was used as positive control. The nested RT-PCR protocol was previously reported [
      • Miyamoto T.
      • Nagafuji K.
      • Akashi K.
      • et al.
      Persistence of multipotent progenitors expressing AML1/ETO transcripts in long-term remission patients with t(8;21) acute myelogenous leukemia.
      ].

      In vitro assays to evaluate the differentiation potential of myeloid progenitors

      The clonogenic colony-forming unit (CFU) assay protocol was previously reported [
      • Miyamoto T.
      • Weissman I.L.
      • Akashi K.
      AML1/ETO-expressing nonleukemic stem cells in acute myelogenous leukemia with 8;21 chromosomal translocation.
      ]. All of the myeloid colonies were picked up and separated to extract the RNA and genomic DNA.

      Identification of the gene mutations

      Genomic DNA was extracted by Micro Kit (QIAGEN, Hilden, Germany). The presence of FLT3-ITD, NRAS, and c-KIT mutations was examined as previously descried [
      • Schessl C.
      • Rawat V.P.
      • Cusan M.
      • et al.
      The AML1-ETO fusion gene and the FLT3 length mutation collaborate in inducing acute leukemia in mice.
      ,
      • Jones D.
      • Yao H.
      • Romans A.
      • et al.
      Modeling interactions between leukemia-specific chromosomal changes, somatic mutations, and gene expression patterns during progression of core-binding factor leukemias.
      ]. The primers for the c-KIT mutation are shown in Supplementary Table E1 (online only, available at www.exphem.org). The clonal PCR product was purified by QIAquick Spin (QIAGEN) and directly sequenced by ABI 3730 Genetic analyzer (Applied Biosystems).

      Identification of breakpoint of AML1/ETO of genomic DNA

      Patients' breakpoints were determined by sequencing the PCR products of long-distance inverse PCR (LDI-PCR) and conventional long distance PCR (LD-PCR), as previously described [
      • Wiemels J.L.
      • Xiao Z.
      • Buffler P.A.
      • et al.
      In utero origin of t(8;21) AML1-ETO translocations in childhood acute myeloid leukemia.
      ,
      • Xiao Z.
      • Greaves M.F.
      • Buffler P.
      • et al.
      Molecular characterization of genomic AML1-ETO fusions in childhood leukemia.
      ]. The primers are listed in Supplementary Table E2 (online only, available at www.exphem.org).

      Single-cell quantitative polymerase chain reaction and genomic polymerase chain reaction

      Single-cell quantitative PCR protocol was previously reported [
      • Kikushige Y.
      • Ishikawa F.
      • Miyamoto T.
      • et al.
      Self-renewing hematopoietic stem cell is the primary target in pathogenesis of human chronic lymphocytic leukemia.
      ]. We used AML1/ETO external primers (Supplementary Table E3, online only, available at www.exphem.org). Single-cell genomic PCR was performed by nested PCR utilizing external and internal primers (Supplementary Table E1, online only, available at www.exphem.org). The method of nested PCR for genomic DNA was the same as the RT-PCR method. For single-cell quantitative nested PCR, we performed first round of RT-PCR with external primers for these diluted, pre-amplified cDNA. The protocol of the first round of PCR was same as that for RT-PCR (thermal cycling setting was 16). Nested PCR was performed by using a BioMark 48 × 48 Dynamic Array system with internal primers (Supplementary Table E1, online only, available at www.exphem.org).

      Microarray analysis

      Eighteen wild-type c-KIT LSC and 13 mutated c-KIT LSC samples were investigated with Sentrix Bead Chip Assay, Human-6 V2 (Illumina, San Diego, CA) as previously reported [
      • Kikushige Y.
      • Shima T.
      • Takayanagi S.
      • et al.
      TIM-3 is a promising target to selectively kill acute myeloid leukemia stem cells.
      ]. Microarray data were analyzed with Gene Spring GX11.01 (Agilent Technologies, Santa Clara, CA).

      Cytokine stimulation assays

      The c-KIT signaling repercussion for AML1/ETO expression level by addition of stem cell factor was evaluated after 24-hour serum-free liquid culture. The details were previously described [
      • Kikushige Y.
      • Yoshimoto G.
      • Miyamoto T.
      • et al.
      Human Flt3 is expressed at the hematopoietic stem cell and the granulocyte/macrophage progenitor stages to maintain cell survival.
      ].

      Results

      c-KIT mutation was found in approximately 40% of patients with t(8;21) acute myelogenous leukemia

      Thirty-three t(8;21) AML patients were enrolled in this study. Previous studies have shown that Class I abnormalities, such as c-KIT, NRAS, and FLT3 mutations, are frequently found in t(8;21) AML [
      • Schessl C.
      • Rawat V.P.
      • Cusan M.
      • et al.
      The AML1-ETO fusion gene and the FLT3 length mutation collaborate in inducing acute leukemia in mice.
      ,
      • Nanri T.
      • Matsuno N.
      • Kawakita T.
      • et al.
      Mutations in the receptor tyrosine kinase pathway are associated with clinical outcome in patients with acute myeloblastic leukemia harboring t(8;21)(q22;q22).
      ,
      • Shen Y.
      • Zhu Y.M.
      • Fan X.
      • et al.
      Gene mutation patterns and their prognostic impact in a cohort of 1185 patients with acute myeloid leukemia.
      ]. As shown in Table 1, 13 out of 33 t(8;21) AML patients had c-KIT mutation, one patient had FLT3-ITD, and no NRAS mutations were observed. In all cases, involvement of Class I mutation was heterozygous.
      Of the patients with c-KIT mutations, six had D816V mutation, five had N822K, and two had D816Y (Table 1). The expression levels of c-KIT mRNA and protein in the CD34+CD38 LSC fraction of t(8;21) AML were equal in all cases, regardless of the involvement of c-KIT mutations, and their levels were identical to those of normal CD34+CD38 HSCs (Supplementary Figure E1, online only, available at www.exphem.org). Out of 13 patients with c-KIT mutations, seven patients relapsed. Six out of seven relapsed patients had mutations identical to those found at diagnosis, whereas Patient 14 acquired an independent de novo c-KIT mutation at relapse (N822K at diagnosis and D816Y at relapse) (Table 1). This intriguing case suggests that the acquisition of c-KIT mutation is the second event that is independent of t(8;21). These data led us to test whether c-KIT mutation is involved in preleukemic AML1/ETO+ HSCs in remission [
      • Miyamoto T.
      • Weissman I.L.
      • Akashi K.
      AML1/ETO-expressing nonleukemic stem cells in acute myelogenous leukemia with 8;21 chromosomal translocation.
      ].

      All single leukemia stem cells possess both AML1/ETO and c-KIT mutations at diagnosis

      Six cases of t(8;21) AML with c-KIT mutations, including D816V, N822K, and D816Y, who maintained complete remission for > 3 years (Patients 3, 7, 8, 11, 21, and 23) were investigated to track AML1/ETO and c-KIT status at both diagnosis and during remission.
      We first tested the presence of AML1/ETO mRNA and c-KIT mutation in LSCs at diagnosis at the single cell level. As shown in Figure 1A, genomic DNA and mRNA were extracted from single CD34+CD38 leukemic marrow cells and were subjected to PCR to test for the presence of AML1/ETO mRNA. The c-KIT gene was amplified from single cell–derived genomic DNA and analyzed by direct sequencing to identify c-KIT mutations.
      Figure thumbnail gr1
      Figure 1A fraction of single preleukemic HSCs in remission expressed a low level of AML1/ETO, whose breakpoints were identical to LSCs at diagnosis. (A) The experimental method of single cell analysis. Genomic DNA and mRNA were extracted from fluorescence activated cell sorting-purified single CD34+CD38 cells. These extracted genomic DNA and mRNA were preamplified and were then analyzed by nested PCR and direct sequence to detect c-KIT mutations, as well as by single-cell quantitative PCR for AML1/ETO transcripts. (B) The representative single-cell quantitative PCR analysis at diagnosis and in remission (Patient 8). Each lane represents the level of AML1/ETO mRNA in single cells. Almost all single CD34+CD38 cells in the bone marrow that were detectable at the first round of PCR at diagnosis expressed AML1/ETO at a high level. In contrast, a small fraction of single CD34+CD38 cells that were detectable only by the second round of PCR in remission expressed AML1/ETO at a very low level. The existence of sorted single cells was confirmed by successful detection of B2MG mRNA. (C) Detection of the breakpoint of the AML1/ETO fusion gene specific to each patient. All single AML1/ETO+ cells at remission had breakpoints identical to those at diagnosis in all three patients tested. Representative data are shown.
      Figure 1B shows representative results of AML1/ETO mRNA analysis of single LSCs (Patient 8). At diagnosis, nearly all LSCs expressed AML1/ETO mRNA at a high level, whereas, in remission, only a few percent of HSCs expressed AML1/ETO mRNA, whose levels were so low they were only detectable after the second round of PCR (Fig. 1B).
      Summarized data are shown in Table 2. In the analysis of six cases at diagnosis, 1,608 (98.9%) out of 1,626 single LSCs that were analyzed had AML1/ETO mRNA, and c-KIT mutations specific to each patient were observed in all 1,608 AML1/ETO mRNA+ cells. In contrast, the remaining 18 CD34+CD38 cells that did not express AML1/ETO mRNA had the wild-type c-KIT, indicating AML1/ETO mRNA and c-KIT mutation always coexist at diagnosis in all single LSCs.
      Table 2Summary of detection of AML1/ETO mRNA+ cells in single CD34+CD38 cells in diagnostic and remission marrow
      Patient(c-KIT mutation)At diagnosisIn remission
      Patient 3(D816V)
      No. of cells262288
      AML1/ETO+ cells/No. of cells262/262 (100%)1/288 (0.3%)
      mutated c-KIT cells/AML1/ETO+ cells262/262 (100%)0/1 (0%)
      Patient 7(D816V)
      No. of cells285288
      AML1/ETO+ cells/No. of cells279/285 (97.9%)2/288 (0.7%)
      mutated c-KIT cells/AML1/ETO+ cells279/279 (100%)0/2 (0%)
      Patient 8(N822K)
      No. of cells274288
      AML1/ETO+ cells/No. of cells270/274 (98.5%)4/288 (1.4%)
      mutated c-KIT cells/AML1/ETO+ cells270/270 (100%)0/4 (0%)
      Patient 11(N822K)
      No. of cells235288
      AML1/ETO+ cells/No. of cells235/235 (100%)4/288 (1.4%)
      mutated c-KIT cells/AML1/ETO+ cells235/235 (100%)0/4 (0%)
      Patient 21(D816Y)
      No. of cells285288
      AML1/ETO+ cells/No. of cells284/285 (99.6%)2/288 (0.7%)
      mutated c-KIT cells/AML1/ETO+ cells284/284 (100%)0/2 (0%)
      Patient 23(D816V)
      No. of cells285288
      AML1/ETO+ cells/No. of cells278/285 (97.5%)3/288 (1.0%)
      mutated c-KIT cells/AML1/ETO+ cells278/278 (100%)0/3 (0%)
      TotalAML1/ETO+ cells/No. of cells1,608/1,626 (98.9%)16/1,728 (0.9%)
      mutated c-KIT cells/AML1/ETO+ cells1,608/1,608 (100%)0/16 (0%)

      All single preleukemic AML1/ETO+ hematopoietic stem cells in remission lacked c-KIT mutation

      We then tested whether AML1/ETO+ HSCs in remission had c-KIT mutation. In each patient maintaining remission for >3 years, single CD34+CD38 HSCs were sorted from the bone marrow and were subjected to PCR to evaluate the presence of AML1/ETO mRNA and c-KIT mutations, as shown in Figure 1A. Summarized data are shown in Table 2.
      In the six patients analyzed at remission, AML1/ETO mRNA was detected in 16 (0.9%) out of 1,728 single cells of CD34+CD38 HSC fraction in the remission marrow. The frequency of AML1/ETO+ HSCs in remission is consistent with previous estimation based on limit-dilution analysis [
      • Miyamoto T.
      • Weissman I.L.
      • Akashi K.
      AML1/ETO-expressing nonleukemic stem cells in acute myelogenous leukemia with 8;21 chromosomal translocation.
      ]. All 16 AML1/ETO mRNA+ CD34+CD38 cells had wild-type c-KIT. Furthermore, no c-KIT mutations were found in the remaining 1,712 CD34+CD38 cells, which did not have AML1/ETO mRNA, suggesting that c-KIT mutations never precede the acquisition of t(8;21).
      To confirm that AML1/ETO+ mutant c-KIT+ LSCs at diagnosis and AML1/ETO+ HSCs in remission belong to a common clone, we tested whether their AML1/ETO breakpoints were identical. We amplified specific breakpoints of the AML1/ETO fusion gene using a long PCR method [
      • Xiao Z.
      • Greaves M.F.
      • Buffler P.
      • et al.
      Molecular characterization of genomic AML1-ETO fusions in childhood leukemia.
      ] in three of these patients (Patient 8, 11, and 23) and prepared PCR primers to detect the breakpoint of the AML1/ETO fusion gene specific to each case. As shown in Figure 1C, in all of these three patients, single AML1/ETO+ cells at remission always had breakpoints identical to those at diagnosis, indicating that AML1/ETO+ HSCs in remission and the original AML LSCs share their origin. Collectively, these results strongly suggested that acquisition of c-KIT mutations in pre-leukemic AML1/ETO+ HSCs may be a critical event for the transformation of t(8;21) preleukemic HSCs into LSCs.

      Preleukemic AML1/ETO+ hematopoietic stem cells without c-KIT mutation can differentiate into myeloerythroid cells in vitro

      The main leukemogenic function of AML1/ETO may be to block differentiation by abrogating the CBF function through dominant-negative inhibition of AML1 [
      • Hart S.M.
      • Foroni L.
      Core binding factor genes and human leukemia.
      ,
      • Komine O.
      • Hayashi K.
      • Natsume W.
      • et al.
      The Runx1 transcription factor inhibits the differentiation of naive CD4+ T cells into the Th2 lineage by repressing GATA3 expression.
      ,
      • Yergeau D.A.
      • Hetherington C.J.
      • Wang Q.
      • et al.
      Embryonic lethality and impairment of haematopoiesis in mice heterozygous for an AML1-ETO fusion gene.
      ]. However, because the expression of AML1/ETO is very low in remission (Fig. 1B), such a low level of AML1/ETO may not be able to inhibit differentiation of AML1/ETO+ HSCs. In fact, AML1/ETO+ mRNA is detectable in a small fraction of mature granulocytes and lymphoid cells in remission [
      • Miyamoto T.
      • Weissman I.L.
      • Akashi K.
      AML1/ETO-expressing nonleukemic stem cells in acute myelogenous leukemia with 8;21 chromosomal translocation.
      ]. Thus, we wished to confirm that AML1/ETO+ HSCs with the wild-type c-KIT in remission differentiate into mature blood cells. Single CD34+CD38 HSCs purified from remission marrow were cultured in methylcellulose, and each colony was picked up (Fig. 2A) and tested for the presence of AML1/ETO and c-KIT mutations (Fig. 2B). As summarized in Table 3, of 7,187 total myeloid colonies from six patients, 89 (1.2%) were positive for AML1/ETO mRNA, and all of these colonies had wild-type c-KIT. These data confirm that AML1/ETO+ HSCs in remission with wild-type c-KIT are capable of differentiating into a variety of myeloerythroid cells and contribute toward maintaining normal hematopoiesis.
      Figure thumbnail gr2
      Figure 2Single preleukemic HSCs in remission do not have c-KIT mutation and can differentiate into mature myeloid cells. (A) Morphology of AML1/ETO-positive myeloid colonies derived from single CD34+CD38 cells in remission. The representative results of Patient 11 are shown. (B) PCR analyses for AML1/ETO mRNA and c-KIT genes of cells picked from single HSC-derived myeloid colonies. AML1/ETO mRNA can be detected in a fraction of myeloid colonies only by nested PCR. Simultaneously, genomic DNA from these colonies was subjected to PCR amplification for the c-KIT gene to evaluate the presence of c-KIT mutation by direct sequencing. Results were summarized in .
      Table 3Summary of detection c-KIT mutation and AML1/ETO mRNA in single HSC-derived myeloid colonies in remission
      Patientc-KIT mutationCFU-GMBFU-ECFU-MegCFU-MixCFU-GCFU-MTotal
      Patient 3(D816V)
      No. of colonies411101988565197957
      AML1/ETO+ colonies/No. of colonies3/4110/1010/980/851/651/1975/957 (0.5%)
      mutated c-KIT colonies/AML1/ETO+ colonies0/30/00/00/00/10/10/5 (0%)
      Patient 7(D816V)
      No. of colonies70618119990451401,361
      AML1/ETO + colonies/No. of colonies6/7064/1810/1990/900/451/14011/1,361 (0.8%)
      mutated c-KIT colonies/AML1/ETO+ colonies0/60/40/00/00/00/10/11 (0%)
      Patient 8(N822K)
      No. of colonies66211013255532591,271
      AML1/ETO+ colonies/No. of colonies7/6621/1100/1321/550/533/25912/1,271 (0.9%)
      mutated c-KIT colonies/AML1/ETO+ colonies0/70/10/00/10/00/30/12 (0%)
      Patient 11(N822K)
      No. of colonies76510011298712191,365
      AML1/ETO+ colonies/No. of colonies12/7656/1001/1121/983/715/20928/1,355 (2.1%)
      mutated c-KIT colonies/AML1/ETO+ colonies0/120/60/10/10/30/51/28 (0%)
      Patient 21(D816Y)
      No. of colonies5971438859582021,147
      AML1/ETO+ colonies/No. of colonies9/5975/1430/880/591/587/20222/1,147 (1.9%)
      mutated c-KIT colonies/AML1/ETO+ colonies0/90/50/00/00/10/70/22 (0%)
      Patient 23(D816V)
      No. of colonies5046914266232821,086
      AML1/ETO+ colonies/No. of colonies5/5041/690/1420/661/234/28211/1,086 (1.0%)
      mutated c-KIT colonies/AML1/ETO+ colonies0/50/10/00/00/10/40/11 (0%)
      Totalmutated c-KIT colonies/AML1/ETO+ colonies/No. of colonies0/42/3,6450/17/7040/1/7710/2/4530/6/3150/21/1,2990/89/7,187
      (0/1.2%)(0/2.4%)(0/0.1%)(0/0.4%)(0/1.9%)(0/1.6%)(0/1.2%)

      Mutated c-KIT signaling endows leukemic stem cells with growth advantages through upregulation of several key molecules

      In these patients, c-KIT mutations have been shown to constitutively provide active c-KIT signaling and may therefore contribute to proliferation and survival of leukemic cells [
      • Masson K.
      • Ronnstrand L.
      Oncogenic signaling from the hematopoietic growth factor receptors c-Kit and Flt3.
      ,
      • Blume-Jensen P.
      • Hunter T.
      Oncogenic kinase signalling.
      ]. To understand the function of mutant c-KIT signaling, we compared the gene expression profile of the CD34+CD38 LSC fraction purified from 18 t(8;21) patients with wild-type c-KIT with that of 13 patients with c-KIT mutants using microarray analysis. As shown in Figure 3A, the clustering analysis showed t(8;21) AML LSCs with c-KIT mutation had a distinct expression pattern, regardless of their type of c-KIT mutation. Genes upregulated or downregulated by > twofold in patients with mutant c-KIT are listed in Supplementary Table E4 (online only, available at www.exphem.org). For example, MCL1, BCL2, NFKB1A and CXCR4 were significantly upregulated in AML LSCs with c-KIT mutations (Fig. 3B). These data are consistent with those in previous reports, in which the c-KIT signaling effectively upregulated these genes to enhance their LSC activity [
      • Cheng M.
      • Zhou J.
      • Wu M.
      • et al.
      CXCR4-mediated bone marrow progenitor cell maintenance and mobilization are modulated by c-kit activity.
      ,
      • Klampfer L.
      • Zhang J.
      • Zelenetz A.O.
      • Uchida H.
      • Nimer S.D.
      The AML1/ETO fusion protein activates transcription of BCL-2.
      ,
      • Luck S.C.
      • Russ A.C.
      • Du J.
      • et al.
      KIT mutations confer a distinct gene expression signature in core binding factor leukaemia.
      ]. Of note, MCL1, a survival-promoting protein essential for HSC survival [
      • Opferman J.T.
      • Iwasaki H.
      • Ong C.C.
      • et al.
      Obligate role of anti-apoptotic MCL-1 in the survival of hematopoietic stem cells.
      ], was upregulated in LSCs with c-KIT mutations (Fig. 3B and C). This may be reasonable because FLT3-ITD, which is another mutation of the receptor-type tyrosine kinase, is known to upregulate MCL1 to promote AML LSC survival [
      • Yoshimoto G.
      • Miyamoto T.
      • Jabbarzadeh-Tabrizi S.
      • et al.
      FLT3-ITD up-regulates MCL-1 to promote survival of stem cells in acute myeloid leukemia via FLT3-ITD-specific STAT5 activation.
      ]. These data collectively suggest that the acquisition of c-KIT mutation may at least contribute to reinforce proliferation and survival of t(8;21) AML LSCs.
      Figure thumbnail gr3
      Figure 3The expression of molecules that enforce the survival of LSCs. (A) Results of microarray analysis of t(8;21) LSCs with wild-type c-KIT and mutated c-KIT. t(8;21) AML LSCs with c-KIT mutation had a distinct expression pattern, irrespective of their types of c-KIT mutation. (B) Representative molecules that upregulated greater than twofold in AML LSCs with mutated c-KIT, as compared with those with the wild-type c-KIT. (C) The quantitative PCR analysis of MCL-1 in N, WT and M cell types. M = LSCs with c-KIT mutation; N = CD34+CD38 normal HSCs; WT = LSCs with wild-type c-KIT.

      Upregulation of AML1/ETO may also constitute a critical step for transformation into leukemia stem cells

      In LSCs in remission, AML1/ETO transcripts become detectable only after the second round of PCR, whereas they are easily detected in LSCs at diagnosis by single PCR (Fig. 1B). This suggests that the increase in AML1/ETO expression may also be important in LSC development. Therefore, we quantified AML1/ETO transcripts in CD34+CD38 cells at diagnosis and remission using a single cell quantitative PCR method.
      Figure 4A shows the amount of AML1/ETO transcripts in 16 single AML1/ETO+ CD34+CD38 cells in remission relative to those in single AML1/ETO+ LSCs at diagnosis in the six patients listed in Table 1. In every case, regardless of the c-KIT mutant type, the amount of AML1/ETO transcripts per cell in remission was more than one hundredfold less than that in LSCs at diagnosis. Taken together, LSCs at diagnosis had approximately five hundred times more AML1/ETO transcripts compared with AML1/ETO+ HSCs in remission at the single cell level. We could not conduct a similar analysis for AML1/ETO+ c-KIT wild-type patients because of the lack of sufficient samples.
      Figure thumbnail gr4
      Figure 4The level of AML1/ETO transcripts in single CD34+CD38 preleukemic HSCs and LSCs at diagnosis. (A) Results of quantitative PCR analysis of AML1/ETO mRNA in single preleukemic HSCs and LSCs at diagnosis. In all cases, LSCs expressed over one hundredfold higher levels of AML1/ETO than preleukemic HSCs in remission, irrespective of their c-KIT mutant types. (B) AML1/ETO mRNA expression in human t(8;21) LSCs with wild type c-KIT and those with mutated c-KIT in the presence or absence of SCF. The amounts of AML1/ETO transcripts were not affected by c-KIT signaling.
      We hypothesized that, in AML1/ETO+ LSCs with c-KIT mutations, constitutively active c-KIT signaling may stimulate the expression of AML1/ETO transcripts. Therefore, we quantified the levels of AML1/ETO transcripts in 5,000 cells of CD34+CD38 LSCs from 10 patients with wild-type c-KIT and in 5,000 cells from patients with c-KIT mutations. However, as shown in Figure 4B, the AML1/ETO transcript level was not significantly different, regardless of the presence of c-KIT mutation. Furthermore, the ligation of c-KIT by addition of stem cell factor (SCF) in culture did not affect the AML1/ETO levels in each group (Fig. 4B). Thus, c-KIT signaling may not stimulate AML1/ETO transcription, suggesting that the acquisition of c-KIT mutation and the upregulation of AML1/ETO transcription are independent events.

      Discussion

      It has been suggested that genetic abnormalities are accumulated in self-renewing, long-surviving HSCs and that these abnormalities cooperatively transform normal HSCs into LSCs [
      • Passegue E.
      • Jamieson C.H.
      • Ailles L.E.
      • Weissman I.L.
      Normal and leukemic hematopoiesis: are leukemias a stem cell disorder or a reacquisition of stem cell characteristics?.
      ,
      • Huntly B.J.
      • Gilliland D.G.
      Leukaemia stem cells and the evolution of cancer-stem-cell research.
      ]. Our intensive analysis of human t(8;21) AML with c-KIT mutation revealed that, at diagnosis, all single LSCs had both AML1/ETO and c-KIT mutants (Table 2). During remission, a small fraction (∼1%) of HSCs or their myeloerythroid colonies had AML1/ETO, and such single AML1/ETO+ HSCs always had wild-type c-KIT. Hematopoietic stem cells with only the c-KIT mutation were never observed (Table 2, Table 3).
      Furthermore, the breakpoint of AML1/ETO was identical at diagnosis and in remission in all three patients analyzed (Fig. 1C), indicating that AML1/ETO+ cells at diagnosis and those in remission originated from the same preleukemic clone. In addition, we found a patient who had N822K at diagnosis but newly obtained D816Y at relapse (Patient 14, Table 1), suggesting that acquisition of c-KIT mutation is a subsequent event. Thus, our sequential analysis provides definitive evidence that HSCs first acquire AML/ETO fusion (Class II) and then c-KIT mutation (Class I) for transformation into LSCs. The proposed developmental model for t(8;21) AML is schematized in Figure 5.
      Figure thumbnail gr5
      Figure 5The proposed multistep developmental scheme of human t(8;21) AML with c-KIT mutations. A normal HSC acquires t(8;21) and forms a reservoir of preleukemic AML1/ETO+ HSCs as the first step. These preleukemic AML1/ETO+ HSCs upregulate AML1/ETO transcripts (second step), and the acquisition of a c-KIT mutation (3rd step) finally transforms preleukemic AML1/ETOhigh HSCs into LSCs. The detailed mechanism of AML1/ETO upregulation at the second step remains unknown. The time course of the second and third steps was not confirmed in this study.
      Because all three types of c-KIT mutations found in t(8;21) AML in this study constitutively transduce an active c-KIT signaling [
      • Orfao A.
      • Garcia-Montero A.C.
      • Sanchez L.
      • Escribano L.
      Recent advances in the understanding of mastocytosis: the role of KIT mutations.
      ], the enhanced c-KIT signals may play a critical role in leukemic transformation. Our patients had D816V, D816Y, and N822K c-KIT mutants, and microarray analysis showed that c-KIT mutations at least caused upregulation of NFKB1A, BCL2, and MCL1, whose signals may promote proliferation/survival of leukemic cells [
      • Klampfer L.
      • Zhang J.
      • Zelenetz A.O.
      • Uchida H.
      • Nimer S.D.
      The AML1/ETO fusion protein activates transcription of BCL-2.
      ,
      • Luck S.C.
      • Russ A.C.
      • Du J.
      • et al.
      KIT mutations confer a distinct gene expression signature in core binding factor leukaemia.
      ,
      • Yoshimoto G.
      • Miyamoto T.
      • Jabbarzadeh-Tabrizi S.
      • et al.
      FLT3-ITD up-regulates MCL-1 to promote survival of stem cells in acute myeloid leukemia via FLT3-ITD-specific STAT5 activation.
      ]. A variety of c-KIT mutations have been found in several other malignant diseases [
      • Orfao A.
      • Garcia-Montero A.C.
      • Sanchez L.
      • Escribano L.
      Recent advances in the understanding of mastocytosis: the role of KIT mutations.
      ]. Consistently, in a mouse model, the enforced c-KIT mutant signaling induced a myeloproliferative neoplasm-like disease [
      • Wang Y.Y.
      • Zhao L.J.
      • Wu C.F.
      • et al.
      C-KIT mutation cooperates with full-length AML1-ETO to induce acute myeloid leukemia in mice.
      ]. Notably, D816V and D816Y are frequently found in mast cell leukemia as well as in t(8;21) AML [
      • Orfao A.
      • Garcia-Montero A.C.
      • Sanchez L.
      • Escribano L.
      Recent advances in the understanding of mastocytosis: the role of KIT mutations.
      ]. Thus, it is possible that active c-KIT signaling itself does not decide the phenotype of leukemia, but it may contribute toward development of AML in the presence of CBF mutations such as AML1/ETO.
      It is also important to note that the significant upregulation of AML1/ETO transcripts may also be a key event in leukemic transformation. Because AML1/ETO knock-in mice did not present any leukemia phenotype [
      • Higuchi M.
      • O'Brien D.
      • Kumaravelu P.
      • Lenny N.
      • Yeoh E.J.
      • Downing J.R.
      Expression of a conditional AML1-ETO oncogene bypasses embryonic lethality and establishes a murine model of human t(8;21) acute myeloid leukemia.
      ], AML1/ETO may not play a role in the inhibition of CBF function. In contrast, in LSCs, AML1/ETO mRNA levels were elevated up to one hundredfold at diagnosis, and this high level of AML1/ETO may be effective in inhibiting myeloid differentiation. Our data suggest that c-KIT signaling is independent of AML1/ETO upregulation (Fig. 4B). Collectively, an unknown, presumably epigenetic mechanism that elevates AML1/ETO mRNA levels may also be critical for the development of t(8;21) AML. This event may precede the acquisition of c-KIT mutations, since no AML1/ETO+ HSCs in remission had mutated c-KIT (Table 2).
      The reason the ordered acquisition of Class II and Class I mutation is consistently observed in t(8;21) AML patients remains unclear. To achieve leukemic hematopoiesis, the single cell with the first oncogenic hit needs to have a clonal advantage for self-renewal compared with normal HSCs. Class I mutations, when their expression is enforced, are capable of conferring cytokine-independent growth activity to cell lines [
      • Wang Y.Y.
      • Zhao L.J.
      • Wu C.F.
      • et al.
      C-KIT mutation cooperates with full-length AML1-ETO to induce acute myeloid leukemia in mice.
      ,
      • Sekine Y.
      • Ikeda O.
      • Mizushima A.
      • et al.
      STAP-2 interacts with and modulates BCR-ABL-mediated tumorigenesis.
      ,
      • Spiekermann K.
      • Bagrintseva K.
      • Schwab R.
      • Schmieja K.
      • Hiddemann W.
      Overexpression and constitutive activation of FLT3 induces STAT5 activation in primary acute myeloid leukemia blast cells.
      ,
      • Mayerhofer M.
      • Gleixner K.V.
      • Hoelbl A.
      • et al.
      Unique effects of KIT D816V in BaF3 cells: induction of cluster formation, histamine synthesis, and early mast cell differentiation antigens.
      ]. In mouse models, HSCs with a high level of BCR-ABL (Class I) enforced by retroviruses showed myeloproliferation, whereas, in healthy human adults, a low level of BCR-ABL transcripts is sometimes detectable [
      • Brassesco M.S.
      Leukemia/lymphoma-associated gene fusions in normal individuals.
      ,
      • Biernaux C.
      • Loos M.
      • Sels A.
      • Huez G.
      • Stryckmans P.
      Detection of major bcr-abl gene expression at a very low level in blood cells of some healthy individuals.
      ,
      • Bose S.
      • Deininger M.
      • Gora-Tybor J.
      • Goldman J.M.
      • Melo J.V.
      The presence of typical and atypical BCR-ABL fusion genes in leukocytes of normal individuals: biologic significance and implications for the assessment of minimal residual disease.
      ]. This suggests that the acquisition of BCR-ABL in HSCs cannot directly provide clonal advantages against normal HSCs. Previous studies reported that mice having HSCs with FLT3-ITD showed expansion of hematopoietic progenitors resulting in myeloproliferation [
      • Schessl C.
      • Rawat V.P.
      • Cusan M.
      • et al.
      The AML1-ETO fusion gene and the FLT3 length mutation collaborate in inducing acute leukemia in mice.
      ,
      • Xiang Z.
      • Kreisel F.
      • Cain J.
      • Colson A.
      • Tomasson M.H.
      Neoplasia driven by mutant c-KIT is mediated by intracellular, not plasma membrane, receptor signaling.
      ]; however, the HSC compartment declines because FLT3-ITD signals perturb the self-renewal of HSCs [
      • Chu S.H.
      • Heiser D.
      • Li L.
      • et al.
      FLT3-ITD knockin impairs hematopoietic stem cell quiescence/homeostasis, leading to myeloproliferative neoplasm.
      ]. Therefore, in the light of de novo development of human AML, if a single HSC achieves FLT3-ITD, the FLT3-ITD+ HSCs may not be able to outgrow normal HSCs. It is possible that HSCs with a c-KIT mutation alone cannot exhibit the advantage of self-renewal against normal HSCs to become a dominant clone because c-KIT and FLT3 use similar signal transduction pathways [
      • Masson K.
      • Ronnstrand L.
      Oncogenic signaling from the hematopoietic growth factor receptors c-Kit and Flt3.
      ,
      • Blume-Jensen P.
      • Hunter T.
      Oncogenic kinase signalling.
      ].
      In contrast, AML1/ETO+ HSCs can persist for over 10 years, maintaining their clones at the level of a few percent of normal HSCs [
      • Miyamoto T.
      • Nagafuji K.
      • Akashi K.
      • et al.
      Persistence of multipotent progenitors expressing AML1/ETO transcripts in long-term remission patients with t(8;21) acute myelogenous leukemia.
      ,
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      • Weissman I.L.
      • Akashi K.
      AML1/ETO-expressing nonleukemic stem cells in acute myelogenous leukemia with 8;21 chromosomal translocation.
      ]. This evidence indicates that HSCs achieved through AML1/ETO do not have advantages in self-renewal but can coexist with normal HSCs for a long period. This is probably because the expression level of AML1/ETO in t(8;21)+ HSCs is low, and it does not significantly block hematopoietic differentiation. It is assumed that the long-term coexistence of normal and t(8;21)+ HSCs allows the latter to acquire second or third oncogenic hits, including Class I mutations and some unknown abnormalities that can cause upregulation of AML1/ETO. It is critical to test whether this hypothesis can be applied to AML with other Class II mutations.
      Collectively, the results of our intensive analysis of de novo t(8;21) human AML suggest that there are at least three independent leukemogenic steps in this type of leukemia (Fig. 5). First, the normal HSC acquires t(8;21), which generates a low level of AML1/ETO. Second, the long-term existence of such AML1/ETO+ HSCs allows them to obtain additional epigenetic or genetic abnormalities that upregulate AML1/ETO. Finally, the acquisition of Class I mutations, such as c-KIT mutants, transforms AML1/ETO+ preleukemic HSCs into AML LSCs. Thus, the original description of Class I and Class II mutations [
      • Speck N.A.
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      MOZ-TIF2, but not BCR-ABL, confers properties of leukemic stem cells to committed murine hematopoietic progenitors.
      ] is very useful in the understanding of the leukemogenesis of AML. In future studies, intensive tracking of mutational processes during clinical courses is critical to understand the step-wise leukemogenesis involved in de novo human AML.

      Acknowledgements

      Dr. Miyamoto and Prof. Akashi received a Grant-in-Aid from the Ministry of Education, Culture, Sports, Science, and Technology, Japan.

      Conflict of interest disclosure

      No financial interest/relationships with financial interest relating to the topic of this article have been declared.

      Supplementary data

      Supplementary Table E1Primers for the genomic PCR analysis of c-KIT mutation
      Forward primers (5′—3′)Reverse primers (5′—3′)°CLength (bp)
      c-KIT exon 1 externalGAGAGCTGGAACGTGGACCGAGGGCCACCTGGAGTCT60267
      c-KIT exon 2 externalGGGACCAAATGTGACCCTCAAAAGCACCAGCACAAATGGG60764
      c-KIT exon 3 externalGCCATTTGGGCCACTAGTCAACAGCTAGCTCCCTGATTGAC60499
      c-KIT exon 4 externalACAGATAGGTTAGCACCATGCTTTGTGGAGGTATGAAAGGGGGA60442
      c-KIT exon 5 externalGAAGTGTTCCAATGACAGACTTGTGTGCTTTCATTGCAAGAGGCT60507
      c-KIT exon 6 externalTGTGACAGTGATTCTACAAGAGCAGCAGCCCCAGACTTTCTTCT60494
      c-KIT exon 7 externalCTGTCAGGTTGCCTTTGTGCACCACCAAACCACGAAGTCT60512
      c-KIT exon 8 externalTTGAACTTGCTCCCTCAGGCCCTGCAGGCTAGAAATTGCAT60505
      c-KIT exon 9 externalATCTGACTCCGAAGCCTCCTTGACAGTATGGTGTGATGCATGT60535
      c-KIT exon 10 and 11 externalGGGGTCAGTTTGGGACTGAGACCTATCAAAAGGGGCGCAA60546
      c-KIT exon 12 and 13 externalATGTCTCTGGACAACATTGACTAGGGTATGTCCTGGGCT60632
      c-KIT exon 14 externalTGTTACTCCACATAAGGCTGCTATCAGCCTTGATTGCAAACCC60414
      c-KIT exon 15 externalTGGGCATGGACCCCAATATCATGCTCTGACCCCAAACACC60475
      c-KIT exon 16 externalATTCGCCATCCCTCTCCTCTTCCAAAGAGACAGCAGTTGGA60537
      c-KIT exon 17 externalTTATGTGAACATCATTCAAGGCGTTGTTTCCTTCACATGCCCCA60543
      c-KIT exon 18 and 19 externalCACATTTCAGCAACAGCAGCAGACCAGTGTGTCATAAAGA60555
      c-KIT exon 20 externalTGTCCAGTTGCATAGCCCTGCACCCTGAAAGCCTGAGGAG60293
      c-KIT exon 21 externalTGGGTTTTGGCCACAAAGTTCAAGACAGGATTGCAGTGGGG60403
      c-KIT exon 1 internalGGAACGTGGACCAGAGCTCGGATGGATGCACCCTGGCGGGTACCA60193
      c-KIT exon 2 internalAGCAGGGCAGCTTTGTCCTACAGTCCTCCAGCTGGGGCCA60600
      c-KIT exon 3 internalGTGTTTTCAGTGTCTGTGACGATCAACGAGAAGAGAAGTC56416
      c-KIT exon 4 internalTGTACACATTTGAGGAGAAACTGACAGACGCACTAGTCG56330
      c-KIT exon 5 internalTGGAGAAGTTAATTGCTGCTACTGTCTAATAATTTCTTC53336
      c-KIT exon 6 internalTTGTAATTCCAAGATGAGGGATCTGATAAGCCCACTG56338
      c-KIT exon 7 internalTATGTGTGTGCGTGTTTATGCAAGTTGAGTCCTTGCAGCTG60374
      c-KIT exon 8 internalCTCAGGAAGGTTGTAGGGTAGAGAAGTCATTCAGTAA56426
      c-KIT exon 9 internalTTCCTAGAGTAAGCCAGGGAATCATGACTGATATGGT56299
      c-KIT exon 10 internalGATCCCATCCTGCCAAAGTTATTGTCTCAGTCATTAGAGCAC56206
      c-KIT exon 11 internalCAGGTAACCATTTATTTGTTCATTGTTTCAGGTGGAAC56327
      c-KIT exon 12 internalCACCAGCACCATCACCACTTAGCAAAAAGCACAACTGGC60209
      c-KIT exon 13 internalTGGTACTGCATGCGCTTGACAAAAGGCAGCTTGGACACGGCT60206
      c-KIT exon 14 internalGTCTGATCCACTGAAGCTGACCCCATGAACTGCCTGTC56319
      c-KIT exon 15 internalAACTTTACATGACTTTCCTCACCCACTTGCAACCCTAACT56386
      c-KIT exon 16 internalGAAGTGATCTGCCTGCAAGGGCTCTAAAATGCTCTGTTCT56350
      c-KIT exon 17 internalGTTTTCACTCTTTACAAGTATGTGTGATATCCCTAGACAGGAT56301
      c-KIT exon 18 internalTGAGCTTCTGAATTAACATCCTTCCTTGATCATCTTGT56331
      c-KIT exon 19 internalGATCCTTGCCAAAGACAACTGAAAACCCTCAACATCTGGGT56292
      c-KIT exon 20 internalTACTGAAGTTGCTGGATGCGGACACACCTGGAACTGGG56244
      c-KIT exon 21 internalAGTATGCCTTTTGTTGCTATTCATTCCTGGAGGGGTG56232
      Supplementary Table E2Patients' specific primers for AML1/ETO mutation
      Forward primers (5′—3′)Reverse primers (5′—3′)
      Patient 8 externalTGAGTCTTGAGGGCTGGTCTGGAGCTTGAAAGAAACCTGCC
      Patient 8 internalGCCCTGCTAGCTCAGTCAATCCTGCCAAGAGTTTGTTGGT
      Patient 11 externalTCTAGGATTGGGTCAGGGCAAGCAGTCTACTGACATGGGCT
      Patient 11 internalGATTGGGTCAGGGCATGTGAGCCTTTCCACAGGTCTTCTCA
      Patient 23 externalAAGGGGCTTCAGGAAGAGTCAAGCTGAGCCGACCACTTTT
      Patient 23 internalGGGCTTCAGGAAGAGTCACAGTGCTTTTAACCCCCTGGGA
      Supplementary Table 3Primers for the single cell quantitative PCR analysis
      Forward primers (5′—3′)Reverse primers (5′—3′)Probe (FAM-MGB)
      AML1 qPCR externalCAAACCCACCGCAAGTCGCCGGCTGACCCTCATGGCTGTGC-
      AML1 qPCR internalCCGCAAGTCGCCACCTACCAGCCGCAGCTGCTCCAGTTCACATCGGCAGAAACT
      AML1/ETO qPCR externalCAAACCCACCGCAAGTCGCCTTGGAGGAGTCAGCCTAGATTGCGT-
      AML1/ETO qPCR internalCCGCAAGTCGCCACCTACCACCGCAAGTCGCCACCTACCACTCGAAATCGTACTGAGAAG
      Supplementary Table E4Genes upregulated or downregulated by over twofold in patients with mutant c-KIT
      GeneFold changeRegulation
      NEU416.14177Up
      IL88.642307Up
      ATF35.3436446Up
      NR4A24.6731033Up
      PDE4B4.560626Up
      SIK14.2487206Up
      CSDE14.216702Up
      NR4A24.1884294Up
      KLF64.1034Up
      RGS24.0624347Up
      DKFZp451A2113.9222076Up
      TIPARP3.7905805Up
      JUN3.77206Up
      CD833.6409142Up
      KLHL153.4783096Up
      C13orf153.394554Up
      AXUD13.3869207Up
      GAS73.2704463Up
      CD833.2681978Up
      LOC6449363.187798Up
      XAGE1B3.1597843Up
      TNFAIP33.0895545Up
      SGK3.0253735Up
      XAGE1A2.968178Up
      CDKN2D2.8945742Up
      NLRP32.882177Up
      TSC22D32.8238995Up
      NLRP32.815252Up
      IL82.8040483Up
      PTGS22.7757351Up
      PDE4B2.7746418Up
      KLF62.774551Up
      TSC22D32.7563179Up
      MYADM2.727143Up
      PSCDBP2.7197104Up
      CD692.719084Up
      BCL11A2.7186139Up
      CYTIP2.6962366Up
      PMAIP12.6845686Up
      IFIT22.6844542Up
      F11R2.6836522Up
      RGPD52.6785529Up
      SPTBN12.6567411Up
      HIF1A2.625503Up
      OSM2.6132405Up
      TPPP32.613133Up
      BCL22.573377Up
      RIPK22.551046Up
      IDS2.5435395Up
      DNAJB142.5313227Up
      IRS22.5246117Up
      PIGA2.502675Up
      PABPC4L2.4957426Up
      CDKN1A2.4884536Up
      FTH12.4739304Up
      ARL4A2.4711127Up
      SIK12.4488606Up
      SLC31A22.4468434Up
      LBR2.4299662Up
      PER12.428982Up
      RNF102.4289358Up
      CXCR42.4257038Up
      HIST2H2BE2.4105597Up
      TREM12.407748Up
      DUSP52.403791Up
      STK17B2.397199Up
      KLF112.3865235Up
      DAD1L2.3744328Up
      HIST1H4A2.3475258Up
      HIST1H1C2.3427014Up
      LMNA2.3376257Up
      MCL12.3375716Up
      LOC1001324182.3364425Up
      LOC6513092.3218596Up
      KLF22.3194962Up
      RANBP92.3180208Up
      HIST1H3D2.3122156Up
      LOC6522262.2992957Up
      TRA2A2.289847Up
      COPS22.2791734Up
      ARL4A2.27622Up
      ERN12.2705226Up
      FTHL112.2671752Up
      LDLR2.266Up
      GALR22.2607083Up
      LMNA2.25953Up
      ITGA92.2548873Up
      CDC42SE12.2428436Up
      KLF62.2388575Up
      SKP12.229393Up
      C1orf552.1997943Up
      RAB172.1989782Up
      MXD12.1932738Up
      UBE2D32.1830506Up
      LOC6541262.177946Up
      RMND5A2.1719003Up
      FTHL22.1643596Up
      CD692.1608243Up
      DNAJB62.1585906Up
      SLC25A242.1563485Up
      ANXA2P12.1527424Up
      WHAMM2.1476474Up
      FTHL112.1474578Up
      FLJ335902.130018Up
      SAP302.1245534Up
      FAM26F2.1223474Up
      KLF112.1153169Up
      LOC6541262.0836039Up
      EAF12.083288Up
      LOC1001299052.0823586Up
      LOC2850742.0809927Up
      NFKBIA2.0617783Up
      LOC6444222.0600662Up
      BCL22.0487194Up
      ETNK12.0485618Up
      SDHALP12.0467134Up
      FTHL32.044776Up
      UBE2L32.0408573Up
      FAM65B2.0376937Up
      ITCH2.0362887Up
      FEM1B2.0333986Up
      FEM1C2.0307894Up
      WWP22.0043664Up
      PIAS22.0022597Up
      F13A12.0020864Up
      VCAM1−3.6228995Down
      CSTF3−3.2687597Down
      MAGED1−3.1033447Down
      CD247−2.8345284Down
      MFGE8−2.8191347Down
      MGC39900−2.6340804Down
      SLC40A1−2.6316283Down
      IRF5−2.626895Down
      C2orf44−2.5530567Down
      KLHL3−2.537466Down
      MYC−2.533614Down
      POLQ−2.519416Down
      RSPO1−2.4792924Down
      C1S−2.4603832Down
      CD247−2.4599783Down
      ZNF616−2.4583354Down
      RNASE3−2.4497318Down
      GPT2−2.4312274Down
      STARD8−2.4143083Down
      SPIRE1−2.4086332Down
      GYG2−2.362726Down
      C2orf40−2.3493814Down
      FAM43A−2.339291Down
      RARRES2−2.3389773Down
      ZNF135−2.337041Down
      TNS3−2.3365765Down
      ANGPT1−2.335653Down
      TCTEX1D1−2.329428Down
      LOC284757−2.3185284Down
      ZNF526−2.3017328Down
      TRAPPC5−2.2595809Down
      CCL23−2.2565548Down
      C6orf125−2.2436416Down
      GINS2−2.2227316Down
      CENPM−2.2061203Down
      WDR40A−2.2041402Down
      TRIM6−2.193719Down
      CCDC34−2.1790016Down
      IFI27L2−2.174044Down
      MGC16121−2.171578Down
      C9orf40−2.1645977Down
      ZNF84−2.159642Down
      FANCE−2.1517787Down
      ANKRD35−2.1510656Down
      CYP46A1−2.146884Down
      SLC44A1−2.1467984Down
      PTGR1−2.1382608Down
      CKS1B−2.1347759Down
      NDUFB7−2.1328485Down
      VANGL2−2.1275373Down
      SLMO1−2.1170223Down
      TRO−2.1113238Down
      HRASLS3−2.0928133Down
      SALL4−2.0898502Down
      ASPM−2.0893974Down
      ZNF232−2.06298Down
      TM4SF1−2.0553544Down
      LOC554206−2.0506268Down
      SH3BP4−2.0495594Down
      DPM3−2.032855Down
      CENTG3−2.0327954Down
      N6AMT1−2.0305235Down
      CDCA5−2.0081842Down
      NLGN2−2.0042732Down
      RCOR2−2.0032747Down
      WDR54−2.0021079Down
      TRO−2.0018616Down
      PRRT3−2.0001419Down
      Figure thumbnail fx1
      Supplementary Figure E1Analyses of CD34+CD38 fraction of normal, diagnostic and remission bone marrow. (A) The expression level of c-KIT in normal HSCs, t(8;21) AML with wild-type c-KIT LSCs, and t(8;21) AML with mutated c-KIT LSCs in a quantitative PCR analysis. Each bar shows the fold difference of the level of c-KIT mRNA in comparison to normal HSCs. There was no significant difference of c-KIT mRNA expression levels among these cells. (B) Phenotype of normal HSCs, t(8;21) AML with wild-type c-KIT LSCs, and t(8;21) AML with mutated c-KIT LSCs by five-color flow cytometer. The phenotype of normal HSCs was CD34+CD38CD90+c-KIT+. LSCs displayed the CD34+CD38CD90c-KIT+ phenotype, irrespective of additional c-KIT mutation. Representative data (Patients 1 and 3) are shown. (C) The expression level of c-KIT did not differ among HSCs and LSCs with or without c-KIT mutant.

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